Data from: Draft Genome Assembly of Passalora sequoiae a Needle Blight Pathogen on Leyland Cypress

Metadata Updated: November 10, 2020

The objective was to generate a high-quality draft assembly of the whole genome as a resource for future applications such as temporal and spatial dispersal studies of the pathogen and to investigate genotype diversity relevant in fungicide resistance studies and cypress breeding programs. We report here the genome sequence of Passalora sequoiae 9LC2 that was isolated from Leyland cypress 'Leighton Green' (Cupressocyparis leylandii) in 2017 in southern Mississippi. The draft genome was obtained using Pacific Biosciences (PacBio) SMRT and Illumina HiSeq 2500 sequencing. Illumina reads were mapped to PacBio assembled contigs to determine base call consistency. Based on a total of 44 contigs with 722 kilobase (kb) average length (range 9.4 kb to 3.4 Mb), the whole genome size was estimated at 31,768,716 bp. Mapping of Illumina reads to PacBio contigs resulted in a 1000 x coverage and were used to confirm accuracy of the consensus sequences. The figures and methods files are documentation in support of a BMC Data Notes publication 'Draft Genome Assembly of Passalora sequoiae a Needle Blight Pathogen on Leyland Cypress'. The images illustrate

Leyland cypress tree showing Passalora twig blight symptoms Infected Leyland cypress leaf with sporulating conidioma of Passalora sequoiae Conidia of Passalora sequoiae Passalora 9LC2 phylogeny

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Access & Use Information

Public: This dataset is intended for public access and use. License: Creative Commons CCZero

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Dates

Metadata Created Date November 10, 2020
Metadata Updated Date November 10, 2020

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date November 10, 2020
Metadata Updated Date November 10, 2020
Publisher Agricultural Research Service
Unique Identifier Unknown
Maintainer
Identifier 4585d67b-12f8-4722-a804-772e2afb2180
Data Last Modified 2020-09-24
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
License https://creativecommons.org/publicdomain/zero/1.0/
Program Code 005:040
Source Datajson Identifier True
Source Hash ab6e65d290a30a05390a1970e0bbd83f1f163f3b
Source Schema Version 1.1
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